PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2385_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 423aa    MW: 46631 Da    PI: 9.2277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2385_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12327126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   yk e+Cr+f+r G C+yG+rCkF H+
  Neem_2385_f_4  3 YKKEPCRNFQR-GSCQYGERCKFLHV 27
                   9**********.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-7228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6229IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-9326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.394329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MHYKKEPCRN FQRGSCQYGE RCKFLHVTPQ QPKSNNAFGF GTQAGSQQQQ NSNPFGFGVQ  60
SSPQSKGANK FGNKQNQFKP FENKWSRLAN SNAASSRQPD NQAQCTDPDS CKRIIAEDFE  120
HERPLWKLTC YGHLKYAPCD IVGDISYEEL RAAAYDEAKR GLSLQSIVEF HFRTFFASSL  180
IQQISLQVER ERNLLNSKLM EFDNVLRNPY TGPFNNVLVR QNPFPPAIPS AFSPTPQNSA  240
PPAVSTFSQL GSSLNTGLGT RHEMPFAPSN NPFGESNSFP NSSMTSGAFG TNNLPSANAG  300
PFDSRFPAQA ISNPFTSNMT SFNNGGIVGA RSNKFAAPAL SNPTPFSVGN QPSIPSIGPV  360
SSSTAPEQAT TNIQLVKNLQ RETVTGDTGV WLKDKWIPGE VWNFIFALSF QQNLQLRPFP  420
LHV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473927.11e-164PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBLV4U2971e-164V4U297_9R
STRINGVIT_09s0070g00470.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.15e-70C3H family protein